MonGenes), ratio of the Angiogenin Protein Human Recombinant?Proteins Kallikrein-10 Protein Overlapping genes along with the size of module (fracOfEffectiveClassSize), module size (effectiveClassSize), ratio of overlapping genes plus the gene set size (fracOfEffectiveSetSize), size from the gene set (effectiveSetSize), name in the gene set (shortDataSetName), symbols of the overlapping genes (overlapGenes). (XLSX 70 kb) Added file eight: ModuleAnnotation_CluGo. The outcome of enrichment analyses performed by CluGO in Cytoscape. ClueGO integrates Gene Ontology (GO) terms too as pathways and creates a functionally organized GO-pathway term network [14]. Each and every tab in the file is designated to a module. The columns of every tabs correspond towards the significant gene ontology (GO) terms with associated single term and group (network) p-values in addition to genes connected with GO term. (XLSX 1913 kb) Added file 9: ModuleAnnotation_GOenrichmentWGCNA. Supplemantary Gene Ontology Annotation performed in WGCNA. This file includes the very first 25 most significant annotation terms for each and every module based on Gene Ontology gene sets enrichment evaluation implemented in WGCNA. Columns inside the file are labeled as followed: rank on the important outcome (rank), module quantity (module), module size (modSize), the amount of gene from the module which might be incorporated within the analysis (bkgrModSize), the size of GO gene set (bkgrTermSize), the amount of overlapping genes from the module with GO gene set (nModGenesInTerm), ratio of overlapping gene (nModGenesInTerm) and size of successful module (bkgrModSize), ratio of overlapping gene nModGenesInTerm) and size of GO gene set, enrichment P worth, Bonferroni corrected P, GO ID (termID), GO term, GO term name and GO term definition. (XLSX 81 kb) Extra file ten: ModuleAnnotation_enrichR_M1. Annotation result of M1 performed in enrichR. EnrichR presently includes annotated gene sets from 102 gene set libraries organized in eight categories. Information on the gene set libraries in EnrichrR is usually located in publications [25, 56]. Every tab with the file contains gene sets of a particular library that was found to be enriched within the module. The initial column represent the gene set (Term), the second column shows the ratio of overlapping module genes with the gene set (Overlap), the following four columns are associated to statistics (P-value, Adjusted P-value, Z-score, Combined Score) along with the fifth column shows the symbols on the overlapping genes. The gene sets are ranked by combined score. (XLSX 2936 kb) Additional file 11: ModuleAnnotation_enrichR_M2. Annotation result of M2 performed in enrichR. EnrichR at the moment contains annotated gene sets from 102 gene set libraries organized in eight categories. Particulars from the gene set libraries in EnrichrR is often located in publications [25, 56]. Every single tab of your file contains gene sets of a certain library that was identified to become enriched within the module. The very first column represent the gene set (Term), the second column shows the ratio of overlapping module genes with all the gene set (Overlap), the following 4 columns are connected to statistics (P-value, Adjusted P-value, Z-score, Combined Score) and the fifth column shows the symbols of your overlapping genes. The gene sets are ranked by combined score. (XLSX 822 kb) Extra file 12: ModuleAnnotation_enrichR_M3. Annotation outcome of M3 performed in enrichR. EnrichR presently contains annotated gene sets from 102 gene set libraries organized in eight categories. Facts from the gene set libraries in EnrichrR is often located in publicat.